HL_9DXL_004

3D structure

PDB id

9DXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RhoBAST RNA aptamer in complex with the SpyRho555 analogue, MaP555

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DXL_004 not in the Motif Atlas

Geometric match to HL_5U3G_002

Geometric discrepancy: 0.141

The information below is about HL_5U3G_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9DXL|1|B|G|7
9DXL|1|B|G|8
9DXL|1|B|A|9
9DXL|1|B|A|10
9DXL|1|B|A|11
9DXL|1|B|C|12

Current chains

Chain B

RhoBAST aptamer

Nearby chains

Chain A

RhoBAST aptamer