HL_9E5P_004

3D structure

PDB id

9E5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

env2 cobalamin riboswitch aptamer domain in complex with ethynyl-benzofuran-cobalamin

Experimental method

X-RAY DIFFRACTION

Resolution

2.36 Å

Loop

Sequence

GUGAAAUUC

Length

9 nucleotides

Bulged bases

9E5P|1|B|U|32, 9E5P|1|B|U|33

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E5P_004 not in the Motif Atlas

Geometric match to HL_9E6Q_010

Geometric discrepancy: 0.1574

The information below is about HL_9E6Q_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

9E5P|1|B|G|26
9E5P|1|B|U|27
9E5P|1|B|G|28
9E5P|1|B|A|29
9E5P|1|B|A|30
9E5P|1|B|A|31
9E5P|1|B|U|32
9E5P|1|B|U|33
9E5P|1|B|C|34

Current chains

Chain B

RNA (76-MER)

Nearby chains