HL_9EAL_004

3D structure

PDB id

9EAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpCas9 with 17-bp R-loop containing 2 terminal mismatches (State II - precleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GAGUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EAL_004 not in the Motif Atlas

Geometric match to HL_5F9R_004

Geometric discrepancy: 0.2678

The information below is about HL_5F9R_004

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_38901.2

Basepair signature

cWW-F-cSH

Number of instances in this motif group

7

Unit IDs

9EAL|1|B|G|87
9EAL|1|B|A|88
9EAL|1|B|G|89
9EAL|1|B|U|90
9EAL|1|B|C|91

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1