HL_9EBB_012

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGGUAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBB_012 not in the Motif Atlas

Geometric match to HL_2JLT_002

Geometric discrepancy: 0.3508

The information below is about HL_2JLT_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

9EBB|1|I|C|292
9EBB|1|I|G|293
9EBB|1|I|G|294
9EBB|1|I|G|295
9EBB|1|I|U|296
9EBB|1|I|A|297
9EBB|1|I|G|298
9EBB|1|I|G|299

Current chains

Chain I

23S ribosomal RNA

Nearby chains