HL_9EBB_028

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUUGAAGAC

Length

10 nucleotides

Bulged bases

9EBB|1|I|U|876, 9EBB|1|I|G|880, 9EBB|1|I|A|881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBB_028 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.1049

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.3

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

9EBB|1|I|G|873
9EBB|1|I|G|874
9EBB|1|I|U|875
9EBB|1|I|U|876
9EBB|1|I|G|877
9EBB|1|I|A|878
9EBB|1|I|A|879
9EBB|1|I|G|880
9EBB|1|I|A|881
9EBB|1|I|C|882

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain 1

DUF5302 domain-containing protein

Chain 2

50S ribosomal protein bL34

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L22