HL_9EBB_031

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

9EBB|1|I|U|1086, 9EBB|1|I|G|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBB_031 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.188

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9EBB|1|I|G|1083
9EBB|1|I|G|1084
9EBB|1|I|A|1085
9EBB|1|I|U|1086
9EBB|1|I|A|1087
9EBB|1|I|A|1088
9EBB|1|I|G|1089
9EBB|1|I|C|1090

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein bL37

Chain M

50S ribosomal protein L16