HL_9EBB_038

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

9EBB|1|I|C|1456, 9EBB|1|I|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBB_038 not in the Motif Atlas

Homologous match to HL_8B0X_061

Geometric discrepancy: 0.1264

The information below is about HL_8B0X_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49081.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9EBB|1|I|G|1455
9EBB|1|I|C|1456
9EBB|1|I|C|1457
9EBB|1|I|A|1458
9EBB|1|I|G|1459
9EBB|1|I|U|1460
9EBB|1|I|C|1461

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 1

DUF5302 domain-containing protein

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22