HL_9EBB_042

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCAGUGGUAACA

Length

12 nucleotides

Bulged bases

9EBB|1|I|A|1690, 9EBB|1|I|G|1691, 9EBB|1|I|U|1692, 9EBB|1|I|C|1698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBB_042 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5347

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9EBB|1|I|U|1688
9EBB|1|I|C|1689
9EBB|1|I|A|1690
9EBB|1|I|G|1691
9EBB|1|I|U|1692
9EBB|1|I|G|1693
9EBB|1|I|G|1694
9EBB|1|I|U|1695
9EBB|1|I|A|1696
9EBB|1|I|A|1697
9EBB|1|I|C|1698
9EBB|1|I|A|1699

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17