HL_9EBB_046

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9EBB|1|I|A|1849, 9EBB|1|I|A|1851, 9EBB|1|I|A|1853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBB_046 not in the Motif Atlas

Homologous match to HL_8B0X_068

Geometric discrepancy: 0.0789

The information below is about HL_8B0X_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9EBB|1|I|C|1847
9EBB|1|I|G|1848
9EBB|1|I|A|1849
9EBB|1|I|C|1850
9EBB|1|I|A|1851
9EBB|1|I|C|1852
9EBB|1|I|A|1853
9EBB|1|I|G|1854

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 1

DUF5302 domain-containing protein

Chain 2

50S ribosomal protein bL34

Chain S

50S ribosomal protein L22