HL_9EBB_056

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

9EBB|1|I|A|2268, 9EBB|1|I|A|2269, 9EBB|1|I|G|2270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBB_056 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.146

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

9EBB|1|I|G|2265
9EBB|1|I|U|2266
9EBB|1|I|A|2267
9EBB|1|I|A|2268
9EBB|1|I|A|2269
9EBB|1|I|G|2270
9EBB|1|I|A|2271
9EBB|1|I|U|2272
9EBB|1|I|G|2273
9EBB|1|I|C|2274

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain 7

50S ribosomal protein bL37

Chain D

50S ribosomal protein L3