HL_9EBB_058

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAAUCG

Length

8 nucleotides

Bulged bases

9EBB|1|I|G|2448, 9EBB|1|I|U|2451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBB_058 not in the Motif Atlas

Homologous match to HL_8B0X_079

Geometric discrepancy: 0.5185

The information below is about HL_8B0X_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33632.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

9EBB|1|I|C|2446
9EBB|1|I|U|2447
9EBB|1|I|G|2448
9EBB|1|I|A|2449
9EBB|1|I|A|2450
9EBB|1|I|U|2451
9EBB|1|I|C|2452
9EBB|1|I|G|2453

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain y

Large ribosomal subunit protein bL28