HL_9EBV_006

3D structure

PDB id

9EBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis yjdF riboswitch aptamer domain in complex with lumichrome

Experimental method

X-RAY DIFFRACTION

Resolution

2.519 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

9EBV|1|M|A|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBV_006 not in the Motif Atlas

Geometric match to HL_8G9Z_003

Geometric discrepancy: 0.2105

The information below is about HL_8G9Z_003

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9EBV|1|M|C|59
9EBV|1|M|G|60
9EBV|1|M|A|61
9EBV|1|M|A|62
9EBV|1|M|A|63
9EBV|1|M|G|64

Current chains

Chain M

RNA (81-MER)

Nearby chains