HL_9EC3_006

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

AGUGAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EC3_006 not in the Motif Atlas

Geometric match to HL_4WF9_004

Geometric discrepancy: 0.2244

The information below is about HL_4WF9_004

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9EC3|1|I|A|137
9EC3|1|I|G|138
9EC3|1|I|U|139
9EC3|1|I|G|140
9EC3|1|I|A|141
9EC3|1|I|U|142
9EC3|1|I|G|143
9EC3|1|I|U|144

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23