HL_9EC3_014

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

9EC3|1|I|G|412, 9EC3|1|I|A|413, 9EC3|1|I|G|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EC3_014 not in the Motif Atlas

Homologous match to HL_8B0X_043

Geometric discrepancy: 0.1471

The information below is about HL_8B0X_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.6

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9EC3|1|I|G|410
9EC3|1|I|U|411
9EC3|1|I|G|412
9EC3|1|I|A|413
9EC3|1|I|G|414
9EC3|1|I|A|415
9EC3|1|I|G|416
9EC3|1|I|C|417
9EC3|1|I|C|418

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24