HL_9EC3_064

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EC3_064 not in the Motif Atlas

Homologous match to HL_8B0X_087

Geometric discrepancy: 0.1784

The information below is about HL_8B0X_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.3

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9EC3|1|I|A|2709
9EC3|1|I|G|2710
9EC3|1|I|U|2711
9EC3|1|I|C|2712
9EC3|1|I|C|2713
9EC3|1|I|A|2714
9EC3|1|I|U|2715
9EC3|1|I|A|2716
9EC3|1|I|U|2717

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain M

50S ribosomal protein L16