HL_9EC3_108
3D structure
- PDB id
- 9EC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9EC3|1|u|G|18, 9EC3|1|u|G|19, 9EC3|1|u|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EC3_108 not in the Motif Atlas
- Homologous match to HL_7MRL_001
- Geometric discrepancy: 0.1471
- The information below is about HL_7MRL_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9EC3|1|u|C|13
9EC3|1|u|A|14
9EC3|1|u|G|15
9EC3|1|u|C|16
9EC3|1|u|C|17
9EC3|1|u|U|17|||A
9EC3|1|u|G|18
9EC3|1|u|G|19
9EC3|1|u|U|20
9EC3|1|u|A|21
9EC3|1|u|G|22
Current chains
- Chain u
- E-tRNA, fMet-tRNA(fMet)
Nearby chains
- Chain F
- 50S ribosomal protein L5
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: