HL_9EHO_002
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGUUAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EHO_002 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.1456
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9EHO|1|2|A|31
9EHO|1|2|U|32
9EHO|1|2|U|33
9EHO|1|2|G|34
9EHO|1|2|U|35
9EHO|1|2|U|36
9EHO|1|2|A|37
9EHO|1|2|A|38
9EHO|1|2|U|39
Current chains
- Chain 2
- tRNA
Nearby chains
- Chain 1
- RNA (5'-R(P*AP*CP*CP*AP*AP*AP*AP*AP*CP*C)-3')
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QQ
- Small ribosomal subunit protein uS19
- Chain YY
- Small ribosomal subunit protein uS12
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