HL_9EHO_006

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

9EHO|1|5|A|39, 9EHO|1|5|A|42

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_006 not in the Motif Atlas

Homologous match to HL_8GLP_001

Geometric discrepancy: 0.0716

The information below is about HL_8GLP_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9EHO|1|5|U|37
9EHO|1|5|A|38
9EHO|1|5|A|39
9EHO|1|5|G|40
9EHO|1|5|C|41
9EHO|1|5|A|42
9EHO|1|5|U|43
9EHO|1|5|A|44

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein eL13

Chain N

Ribosomal protein L15

Chain a

Large ribosomal subunit protein uL15

Chain o

Large ribosomal subunit protein eL42