HL_9EHO_008
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EHO_008 not in the Motif Atlas
- Homologous match to HL_9AXU_003
- Geometric discrepancy: 0.1111
- The information below is about HL_9AXU_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76371.4
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9EHO|1|5|C|89
9EHO|1|5|G|90
9EHO|1|5|G|91
9EHO|1|5|C|92
9EHO|1|5|G|93
9EHO|1|5|A|94
9EHO|1|5|G|95
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain L
- Large ribosomal subunit protein eL13
- Chain Q
- Large ribosomal subunit protein uL15/eL18 domain-containing protein
- Chain a
- Large ribosomal subunit protein uL15
- Chain o
- Large ribosomal subunit protein eL42
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