HL_9EHO_018

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9EHO|1|5|U|1449, 9EHO|1|5|A|1453, 9EHO|1|5|A|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_018 not in the Motif Atlas

Homologous match to HL_9PN5_020

Geometric discrepancy: 0.0806

The information below is about HL_9PN5_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.3

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

9EHO|1|5|A|1446
9EHO|1|5|C|1447
9EHO|1|5|G|1448
9EHO|1|5|U|1449
9EHO|1|5|G|1450
9EHO|1|5|C|1451
9EHO|1|5|A|1452
9EHO|1|5|A|1453
9EHO|1|5|A|1454
9EHO|1|5|U|1455

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

Large ribosomal subunit protein uL22

Chain j

Ribosomal protein L37