HL_9EHO_021

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCGAACG

Length

8 nucleotides

Bulged bases

9EHO|1|5|A|1675

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_021 not in the Motif Atlas

Geometric match to HL_8GLP_008

Geometric discrepancy: 0.1152

The information below is about HL_8GLP_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

9EHO|1|5|C|1670
9EHO|1|5|C|1671
9EHO|1|5|C|1672
9EHO|1|5|G|1673
9EHO|1|5|A|1674
9EHO|1|5|A|1675
9EHO|1|5|C|1676
9EHO|1|5|G|1677

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29