HL_9EHO_025
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGAGACCU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EHO_025 not in the Motif Atlas
- Homologous match to HL_8GLP_033
- Geometric discrepancy: 0.1986
- The information below is about HL_8GLP_033
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9EHO|1|5|A|2133
9EHO|1|5|C|2134
9EHO|1|5|G|2135
9EHO|1|5|A|2136
9EHO|1|5|G|2137
9EHO|1|5|A|2138
9EHO|1|5|C|2139
9EHO|1|5|C|2140
9EHO|1|5|U|2141
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain P
- Large ribosomal subunit protein uL22
- Chain R
- Ribosomal protein L19
- Chain d
- Large ribosomal subunit protein eL31
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