HL_9EHO_027

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_027 not in the Motif Atlas

Homologous match to HL_9PN5_032

Geometric discrepancy: 0.2328

The information below is about HL_9PN5_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9EHO|1|5|C|2215
9EHO|1|5|G|2216
9EHO|1|5|A|2217
9EHO|1|5|A|2218
9EHO|1|5|A|2219
9EHO|1|5|G|2220

Current chains

Chain 5

28S rRNA

Nearby chains

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37