HL_9EHO_035

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9EHO|1|5|U|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_035 not in the Motif Atlas

Homologous match to HL_8GLP_047

Geometric discrepancy: 0.0655

The information below is about HL_8GLP_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

9EHO|1|5|C|2724
9EHO|1|5|U|2725
9EHO|1|5|U|2726
9EHO|1|5|C|2727
9EHO|1|5|G|2728
9EHO|1|5|G|2729

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain n

eS32

Chain p

Large ribosomal subunit protein eL43