HL_9EHO_038

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCGAGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_038 not in the Motif Atlas

Homologous match to HL_9PN5_045

Geometric discrepancy: 0.3

The information below is about HL_9PN5_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9EHO|1|5|G|3479
9EHO|1|5|C|3480
9EHO|1|5|C|3481
9EHO|1|5|G|3482
9EHO|1|5|A|3483
9EHO|1|5|G|3484
9EHO|1|5|C|3485

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Large ribosomal subunit protein uL2

Chain N

Ribosomal protein L15