HL_9EHO_044
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCAAACGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 9EHO|1|5|A|4170, 9EHO|1|5|C|4177
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EHO_044 not in the Motif Atlas
- Homologous match to HL_8GLP_060
- Geometric discrepancy: 0.0654
- The information below is about HL_8GLP_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.3
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9EHO|1|5|U|4166
9EHO|1|5|C|4167
9EHO|1|5|A|4168
9EHO|1|5|A|4169
9EHO|1|5|A|4170
9EHO|1|5|C|4171
9EHO|1|5|G|4172
9EHO|1|5|G|4173
9EHO|1|5|U|4174
9EHO|1|5|A|4175
9EHO|1|5|A|4176
9EHO|1|5|C|4177
9EHO|1|5|G|4178
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- Large ribosomal subunit protein uL16
- Chain T
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L29
Coloring options: