HL_9EHO_048

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_048 not in the Motif Atlas

Homologous match to HL_8GLP_064

Geometric discrepancy: 0.0999

The information below is about HL_8GLP_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9EHO|1|5|C|4277
9EHO|1|5|G|4278
9EHO|1|5|A|4279
9EHO|1|5|A|4280
9EHO|1|5|A|4281
9EHO|1|5|G|4282

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein

Chain T

60S ribosomal protein L21