HL_9EHO_049

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCGCAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_049 not in the Motif Atlas

Homologous match to HL_9H3G_062

Geometric discrepancy: 0.1282

The information below is about HL_9H3G_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.3

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9EHO|1|5|C|4381
9EHO|1|5|G|4382
9EHO|1|5|U|4383
9EHO|1|5|U|4384
9EHO|1|5|C|4385
9EHO|1|5|G|4386
9EHO|1|5|C|4387
9EHO|1|5|A|4388
9EHO|1|5|G|4389

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

Large ribosomal subunit protein uL16

Chain m

Ubiquitin-ribosomal protein eL40 fusion protein