HL_9EHO_052

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_052 not in the Motif Atlas

Homologous match to HL_8GLP_069

Geometric discrepancy: 0.0696

The information below is about HL_8GLP_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9EHO|1|5|C|4504
9EHO|1|5|G|4505
9EHO|1|5|U|4506
9EHO|1|5|G|4507
9EHO|1|5|A|4508
9EHO|1|5|G|4509

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Large ribosomal subunit protein uL2