HL_9EHO_056

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAUACGAC

Length

9 nucleotides

Bulged bases

9EHO|1|5|C|5091

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_056 not in the Motif Atlas

Homologous match to HL_9PN5_068

Geometric discrepancy: 0.0975

The information below is about HL_9PN5_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.3

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9EHO|1|5|G|5090
9EHO|1|5|C|5091
9EHO|1|5|A|5092
9EHO|1|5|U|5093
9EHO|1|5|A|5094
9EHO|1|5|C|5095
9EHO|1|5|G|5096
9EHO|1|5|A|5097
9EHO|1|5|C|5098

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

Large ribosomal subunit protein uL22

Chain d

Large ribosomal subunit protein eL31