HL_9EHO_066
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EHO_066 not in the Motif Atlas
- Homologous match to HL_9PN5_085
- Geometric discrepancy: 0.1942
- The information below is about HL_9PN5_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.6
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 434
Unit IDs
9EHO|1|AA|U|661
9EHO|1|AA|C|662
9EHO|1|AA|A|663
9EHO|1|AA|G|664
9EHO|1|AA|G|665
9EHO|1|AA|G|666
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain DD
- Small ribosomal subunit protein uS5
- Chain KK
- Small ribosomal subunit protein uS4
- Chain MM
- 40S ribosomal protein S11
- Chain XX
- 40S ribosomal protein S15a
- Chain YY
- Small ribosomal subunit protein uS12
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