HL_9EHO_078
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EHO_078 not in the Motif Atlas
- Homologous match to HL_9H3G_098
- Geometric discrepancy: 0.0962
- The information below is about HL_9H3G_098
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.6
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 434
Unit IDs
9EHO|1|AA|U|1795
9EHO|1|AA|G|1796
9EHO|1|AA|C|1797
9EHO|1|AA|A|1798
9EHO|1|AA|A|1799
9EHO|1|AA|A|1800
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- eS32
- Chain p
- Large ribosomal subunit protein eL43
Coloring options: