HL_9ELY_004

3D structure

PDB id

9ELY (explore in PDB, NAKB, or RNA 3D Hub)

Description

raiA RNA motif (Clostridium acetobutylicum)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ELY_004 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2826

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9ELY|1|A|G|138
9ELY|1|A|G|139
9ELY|1|A|U|140
9ELY|1|A|A|141
9ELY|1|A|A|142
9ELY|1|A|U|143
9ELY|1|A|U|144
9ELY|1|A|C|145

Current chains

Chain A

raiA RNA

Nearby chains