HL_9F1B_003

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

9F1B|1|A2|A|158, 9F1B|1|A2|U|160, 9F1B|1|A2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_003 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.1451

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9F1B|1|A2|G|156
9F1B|1|A2|U|157
9F1B|1|A2|A|158
9F1B|1|A2|A2M|159
9F1B|1|A2|U|160
9F1B|1|A2|U|161
9F1B|1|A2|C|162

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ax

40S ribosomal protein S24