3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
UGCAAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9F1B_023 not in the Motif Atlas
Homologous match to HL_8C3A_216
Geometric discrepancy: 0.075
The information below is about HL_8C3A_216
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
302

Unit IDs

9F1B|1|A2|U|1179
9F1B|1|A2|G|1180
9F1B|1|A2|C|1181
9F1B|1|A2|A|1182
9F1B|1|A2|A|1183
9F1B|1|A2|A|1184

Current chains

Chain A2
18S rRNA

Nearby chains

Chain Az
60S ribosomal protein L41
Chain B5
Large subunit ribosomal RNA; LSU rRNA
Chain Bp
60S ribosomal protein L37a

Coloring options:


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