HL_9F1B_038

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGCGGUG

Length

7 nucleotides

Bulged bases

9F1B|1|B5|G|134, 9F1B|1|B5|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_038 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1227

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9F1B|1|B5|C|131
9F1B|1|B5|G|132
9F1B|1|B5|C|133
9F1B|1|B5|G|134
9F1B|1|B5|G|135
9F1B|1|B5|U|136
9F1B|1|B5|G|137

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BN

Ribosomal protein L15

Chain Bh

60S ribosomal protein L35

Chain Bj

Ribosomal protein L37