HL_9F1B_049

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

9F1B|1|B5|U|1070, 9F1B|1|B5|C|1071, 9F1B|1|B5|C|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_049 not in the Motif Atlas

Geometric match to HL_8SP9_002

Geometric discrepancy: 0.391

The information below is about HL_8SP9_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

9F1B|1|B5|G|1069
9F1B|1|B5|U|1070
9F1B|1|B5|C|1071
9F1B|1|B5|C|1072
9F1B|1|B5|C|1073
9F1B|1|B5|C|1074

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B

Large ribosomal subunit protein uL18

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BI

60S ribosomal protein L10