3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
C(OMG)UCUUG(1MA)AAC(A2M)CG
Length
14 nucleotides
Bulged bases
9F1B|1|B5|C|1269
QA status
Modified nucleotides: OMG, 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9F1B_050 not in the Motif Atlas
Geometric match to HL_4V9F_011
Geometric discrepancy: 0.1214
The information below is about HL_4V9F_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

9F1B|1|B5|C|1259
9F1B|1|B5|OMG|1260
9F1B|1|B5|U|1261
9F1B|1|B5|C|1262
9F1B|1|B5|U|1263
9F1B|1|B5|U|1264
9F1B|1|B5|G|1265
9F1B|1|B5|1MA|1266
9F1B|1|B5|A|1267
9F1B|1|B5|A|1268
9F1B|1|B5|C|1269
9F1B|1|B5|A2M|1270
9F1B|1|B5|C|1271
9F1B|1|B5|G|1272

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BB
Ribosomal protein L3
Chain Ba
60S ribosomal protein L27a
Chain Be
Ribosomal protein L32

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