3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
UGAAGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9F1B_052 not in the Motif Atlas
Homologous match to HL_8C3A_016
Geometric discrepancy: 0.0666
The information below is about HL_8C3A_016
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

9F1B|1|B5|U|1333
9F1B|1|B5|G|1334
9F1B|1|B5|A|1335
9F1B|1|B5|A|1336
9F1B|1|B5|G|1337
9F1B|1|B5|G|1338

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BL
Large ribosomal subunit protein eL13
Chain BQ
Large ribosomal subunit protein eL18
Chain Ba
60S ribosomal protein L27a
Chain Bi
60S ribosomal protein L36

Coloring options:


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