HL_9F1B_069

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_069 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.1499

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9F1B|1|B5|C|2301
9F1B|1|B5|G|2302
9F1B|1|B5|A|2303
9F1B|1|B5|G|2304
9F1B|1|B5|C|2305
9F1B|1|B5|G|2306

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BN

Ribosomal protein L15

Chain Bj

Ribosomal protein L37