HL_9F1B_072

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9F1B|1|B5|U|2373, 9F1B|1|B5|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_072 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.128

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9F1B|1|B5|G|2366
9F1B|1|B5|U|2367
9F1B|1|B5|U|2368
9F1B|1|B5|C|2369
9F1B|1|B5|A|2370
9F1B|1|B5|G|2371
9F1B|1|B5|A|2372
9F1B|1|B5|U|2373
9F1B|1|B5|C|2374
9F1B|1|B5|C|2375

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain BX

Large ribosomal subunit protein uL23

Chain Bg

Large ribosomal subunit protein eL34