HL_9F1B_077

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

9F1B|1|B5|C|2552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_077 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.3059

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9F1B|1|B5|G|2548
9F1B|1|B5|G|2549
9F1B|1|B5|U|2550
9F1B|1|B5|U|2551
9F1B|1|B5|C|2552
9F1B|1|B5|C|2553

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain BX

Large ribosomal subunit protein uL23

Chain Cu

Transcription factor BTF3