HL_9F1B_092

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9F1B|1|B5|G|3941

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_092 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1253

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

9F1B|1|B5|C|3939
9F1B|1|B5|U|3940
9F1B|1|B5|G|3941
9F1B|1|B5|OMG|3942
9F1B|1|B5|G|3943
9F1B|1|B5|G|3944
9F1B|1|B5|C|3945
9F1B|1|B5|G|3946
9F1B|1|B5|G|3947

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

P-site tRNA

Chain BI

60S ribosomal protein L10

Chain Bb

60S ribosomal protein L29