HL_9F1B_094

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_094 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1564

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9F1B|1|B5|G|3996
9F1B|1|B5|A|3997
9F1B|1|B5|C|3998
9F1B|1|B5|A|3999
9F1B|1|B5|G|4000
9F1B|1|B5|A|4001
9F1B|1|B5|A|4002
9F1B|1|B5|A|4003
9F1B|1|B5|C|4004

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BJ

60S ribosomal protein L11