HL_9F1B_107

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9F1B|1|B5|U|4715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_107 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1146

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

9F1B|1|B5|G|4714
9F1B|1|B5|U|4715
9F1B|1|B5|A|4716
9F1B|1|B5|G|4717
9F1B|1|B5|A|4718
9F1B|1|B5|C|4719
9F1B|1|B5|G|4720
9F1B|1|B5|A|4721
9F1B|1|B5|C|4722

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

Large ribosomal subunit protein uL22