HL_9F1B_108

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9F1B|1|B5|C|4763, 9F1B|1|B5|U|4765, 9F1B|1|B5|C|4766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_108 not in the Motif Atlas

Homologous match to HL_5TBW_071

Geometric discrepancy: 0.5673

The information below is about HL_5TBW_071

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

9F1B|1|B5|C|4760
9F1B|1|B5|U|4761
9F1B|1|B5|C|4762
9F1B|1|B5|C|4763
9F1B|1|B5|C|4764
9F1B|1|B5|U|4765
9F1B|1|B5|C|4766
9F1B|1|B5|G|4767

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8