HL_9F1C_028

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

CCCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1C_028 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.1943

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9F1C|1|A2|C|1418
9F1C|1|A2|C|1419
9F1C|1|A2|C|1420
9F1C|1|A2|G|1421
9F1C|1|A2|A|1422
9F1C|1|A2|G|1423

Current chains

Chain A2

18S rRNA

Nearby chains

Chain As

40S ribosomal protein S19