HL_9F1C_047

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

CGAGACCUG

Length

9 nucleotides

Bulged bases

9F1C|1|B5|C|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1C_047 not in the Motif Atlas

Geometric match to HL_12CJ_003

Geometric discrepancy: 0.3902

The information below is about HL_12CJ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59138.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9F1C|1|B5|C|862
9F1C|1|B5|G|863
9F1C|1|B5|A|864
9F1C|1|B5|G|865
9F1C|1|B5|A|866
9F1C|1|B5|C|867
9F1C|1|B5|C|868
9F1C|1|B5|U|869
9F1C|1|B5|G|870

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30