HL_9F1C_049

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

9F1C|1|B5|U|1070, 9F1C|1|B5|C|1071, 9F1C|1|B5|C|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1C_049 not in the Motif Atlas

Geometric match to HL_6AAX_001

Geometric discrepancy: 0.3306

The information below is about HL_6AAX_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

9F1C|1|B5|G|1069
9F1C|1|B5|U|1070
9F1C|1|B5|C|1071
9F1C|1|B5|C|1072
9F1C|1|B5|C|1073
9F1C|1|B5|C|1074

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B

Large ribosomal subunit protein uL18

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BI

60S ribosomal protein L10