HL_9F1C_050

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

C(OMG)UCUUG(1MA)AAC(A2M)CG

Length

14 nucleotides

Bulged bases

9F1C|1|B5|C|1269

QA status

Modified nucleotides: OMG, 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1C_050 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1602

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9F1C|1|B5|C|1259
9F1C|1|B5|OMG|1260
9F1C|1|B5|U|1261
9F1C|1|B5|C|1262
9F1C|1|B5|U|1263
9F1C|1|B5|U|1264
9F1C|1|B5|G|1265
9F1C|1|B5|1MA|1266
9F1C|1|B5|A|1267
9F1C|1|B5|A|1268
9F1C|1|B5|C|1269
9F1C|1|B5|A2M|1270
9F1C|1|B5|C|1271
9F1C|1|B5|G|1272

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain Ba

60S ribosomal protein L27a

Chain Be

Ribosomal protein L32